Transcript: ENSPTRT00000016790.5 CASC3-202

Description

CASC3 exon junction complex subunit [Source:VGNC Symbol;Acc:VGNC:57299]

Location

About this transcript

This transcript has 19 exons, is annotated with 19 domains and features and maps to 271 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000079474.1	CASC3-201	1755	584aa	ENSPTRP00000069943.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3S047	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSPTRT00000016790.5	CASC3-202	1734	577aa	ENSPTRP00000015537.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	H2QCW0	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

Summary

Statistics

Exons: 19, Coding exons: 19, Transcript length: 1,734 bps, Translation length: 577 residues

Version

ENSPTRT00000016790.5

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.