Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: BDNF ENSPTRG00000040882

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Description

brain derived neurotrophic factor [Source:VGNC Symbol;Acc:VGNC:11265]

Location

Chromosome 11: 27,652,030-27,717,864 reverse strand.

Pan_tro_3.0:CM000325.3

About this gene

This gene has 4 transcripts (splice variants), 196 orthologues and 3 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000073420.2	BDNF-202	990	329aa	ENSPTRP00000060385.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6D2XQP1 H2RFU0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSPTRT00000088436.1	BDNF-203	789	262aa	ENSPTRP00000091119.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3TPF5 A0A6D2Y3I1	-
ENSPTRT00000083577.1	BDNF-204	768	255aa	ENSPTRP00000089710.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3TKB4 A0A6D2XIL7	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSPTRT00000107965.1	BDNF-201	768	255aa	ENSPTRP00000080432.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3TKB4 A0A6D2XIL7	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,

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Summary

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