Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Cellular component
- GO: Biological process
- GO: Molecular function
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: MBD5 ENSPTRG00000029184

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Description

methyl-CpG binding domain protein 5 [Source:VGNC Symbol;Acc:VGNC:14312]

Location

Chromosome 2B: 38,176,793-38,296,697 forward strand.

Pan_tro_3.0:CM000316.3

About this gene

This gene has 5 transcripts (splice variants), 227 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000056404.4	MBD5-202	6278	1727aa	ENSPTRP00000049140.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6D2XQP3 H2R6I4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSPTRT00000093427.1	MBD5-201	4953	1494aa	ENSPTRP00000086738.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6D2WG91 K7BRU5	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSPTRT00000108540.1	MBD5-204	3264	1087aa	ENSPTRP00000093665.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3TWL9	-
ENSPTRT00000088033.1	MBD5-205	1344	447aa	ENSPTRP00000065411.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3RM37	-
ENSPTRT00000106303.1	MBD5-203	117	38aa	ENSPTRP00000068722.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3RVI4 A0A6D2WDU8	-

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Summary

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