Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: PITX2 ENSPTRG00000016371

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Description

paired like homeodomain 2 [Source:VGNC Symbol;Acc:VGNC:12956]

Location

Chromosome 4: 113,622,987-113,646,171 reverse strand.

Pan_tro_3.0:CM000318.3

About this gene

This gene has 4 transcripts (splice variants), 83 orthologues and 58 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000030452.6	PITX2-203	1677	324aa	ENSPTRP00000028118.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6D2VV82 H2QQ16	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSPTRT00000108318.1	PITX2-202	5457	317aa	ENSPTRP00000064705.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6D2WTJ3 K7DRL4	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSPTRT00000083052.1	PITX2-201	5312	271aa	ENSPTRP00000082192.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6D2X5G9 K7DFT6	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSPTRT00000081211.1	PITX2-204	525	174aa	ENSPTRP00000068334.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3RUD9 A0A6D2Y078	-

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Summary

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