Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Cellular component
- GO: Biological process
- GO: Molecular function
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: COL18A1 ENSPTRG00000014005

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Description

collagen type XVIII alpha 1 chain [Source:VGNC Symbol;Acc:VGNC:10689]

Location

Chromosome 21: 32,066,788-32,181,281 forward strand.

Pan_tro_3.0:CM004190.1

About this gene

This gene has 3 transcripts (splice variants), 177 orthologues and 38 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000046373.5	COL18A1-203	6664	1754aa	ENSPTRP00000053920.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6D2YAI0 H2RAH2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSPTRT00000098662.1	COL18A1-201	4020	1339aa	ENSPTRP00000092192.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6D2WR64 K7BUN1	-
ENSPTRT00000098620.1	COL18A1-202	3597	1198aa	ENSPTRP00000077825.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3SLI7	-

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Summary

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