Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: BCL11A ENSPTRG00000011944

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Description

BCL11 transcription factor A [Source:VGNC Symbol;Acc:VGNC:3831]

Location

Chromosome 2A: 61,756,209-61,858,492 reverse strand.

Pan_tro_3.0:CM000315.3

About this gene

This gene has 5 transcripts (splice variants), 213 orthologues and 15 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000046502.3	BCL11A-201	3905	835aa	ENSPTRP00000042480.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6D2W807 H2R1K0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSPTRT00000093662.1	BCL11A-202	3805	801aa	ENSPTRP00000093459.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3TW57 A0A6D2XRQ8	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSPTRT00000105834.1	BCL11A-203	2463	820aa	ENSPTRP00000081867.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3SZ52	-
ENSPTRT00000078409.1	BCL11A-204	504	167aa	ENSPTRP00000074968.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3SD53 A0A6D2WD38	-
ENSPTRT00000082430.1	BCL11A-205	429	142aa	ENSPTRP00000066980.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3RRM9 A0A6D2XNP1	-

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Summary

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