Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
Ontologies
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

Configure this page

Share this page

Bookmark this page

.

Gene: TAF1B ENSPTRG00000011642

.

Description

TATA-box binding protein associated factor, RNA polymerase I subunit B [Source:VGNC Symbol;Acc:VGNC:10292]

Location

Chromosome 2A: 9,945,423-10,042,403 forward strand.

Pan_tro_3.0:CM000315.3

About this gene

This gene has 3 transcripts (splice variants) and 195 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000021700.4	TAF1B-201	2824	588aa	ENSPTRP00000020020.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6D2XUY9 H2QHF2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSPTRT00000103229.1	TAF1B-203	591	196aa	ENSPTRP00000073283.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3S8G9	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSPTRT00000101910.1	TAF1B-202	174	58aa	ENSPTRP00000082918.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2J8NM32 A0A6D2XKR1	-

.

Summary

.

.