Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
Ontologies
- GO: Cellular component
- GO: Biological process
- GO: Molecular function
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: SSX2IP ENSPTRG00000000906

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Description

SSX family member 2 interacting protein [Source:VGNC Symbol;Acc:VGNC:12957]

Location

Chromosome 1: 85,065,980-85,112,701 reverse strand.

Pan_tro_3.0:CM000314.3

About this gene

This gene has 3 transcripts (splice variants) and 274 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000109155.1	SSX2IP-202	2155	614aa	ENSPTRP00000077101.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3SJM4 A0A6D2W376	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSPTRT00000001713.4	SSX2IP-201	5633	613aa	ENSPTRP00000001562.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6D2WMT5 H2PZB0	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSPTRT00000092885.1	SSX2IP-203	1641	546aa	ENSPTRP00000088472.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3TGV6	-

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Summary

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