Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: FUBP1 ENSPTRG00000000888

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Description

far upstream element binding protein 1 [Source:VGNC Symbol;Acc:VGNC:7407]

Location

Chromosome 1: 78,061,922-78,093,065 reverse strand.

Pan_tro_3.0:CM000314.3

About this gene

This gene has 4 transcripts (splice variants), 59 orthologues and 19 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000088907.1	FUBP1-203	2031	676aa	ENSPTRP00000074615.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3SC40	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSPTRT00000083067.1	FUBP1-201	2493	644aa	ENSPTRP00000073934.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6D2YAM1 K7BSY0	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSPTRT00000081951.1	FUBP1-202	2256	655aa	ENSPTRP00000080670.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3SUJ5 A0A6D2XP68	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSPTRT00000001685.6	FUBP1-204	1998	665aa	ENSPTRP00000001537.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	H2PZ98	-

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Summary

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