Transcript: ENSMUST00000236780.2 Tbc1d10c-206

Description

TBC1 domain family, member 10c [Source:MGI Symbol;Acc:MGI:1922072]

Gene Synonyms

1810062O14Rik, Carabin

Location

Chromosome 19: 4,233,410-4,240,927 reverse strand.

About this transcript

This transcript has 8 exons, is associated with 758 variant alleles and maps to 192 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000040247.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000235450.2	Tbc1d10c-202	1996	444aa	ENSMUSP00000158437.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS37885	Q8C9V1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSMUST00000045864.4	Tbc1d10c-201	1658	427aa	ENSMUSP00000042660.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q8C9V1-2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000237495.2	Tbc1d10c-209	1316	179aa	ENSMUSP00000158341.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q8C9V1-4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENSMUST00000236780.2	Tbc1d10c-206	2699	179aa	ENSMUSP00000158519.2	Nonsense mediated decay		Q8C9V1-4	-
ENSMUST00000236890.2	Tbc1d10c-207	2154	192aa	ENSMUSP00000158002.2	Nonsense mediated decay		A0A494BAA5	-
ENSMUST00000235782.2	Tbc1d10c-204	1589	189aa	ENSMUSP00000157997.2	Nonsense mediated decay		A0A494BA99	-
ENSMUST00000235487.2	Tbc1d10c-203	1473	179aa	ENSMUSP00000158162.2	Nonsense mediated decay		Q8C9V1-4	-
ENSMUST00000237206.2	Tbc1d10c-208	993	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-
ENSMUST00000236719.2	Tbc1d10c-205	2102	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
ENSMUST00000238094.2	Tbc1d10c-210	878	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

Summary

Statistics

Exons: 8, Coding exons: 5, Transcript length: 2,699 bps, Translation length: 179 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q8C9V1

Version

ENSMUST00000236780.2

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSMUST00000236780.2 Tbc1d10c-206

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Transcript: ENSMUST00000236780.2 Tbc1d10c-206

Summary

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