Transcript: ENSMUST00000235530.2 H2-Eb1-203

Description

histocompatibility 2, class II antigen E beta [Source:MGI Symbol;Acc:MGI:95901]

Gene Synonyms

H-2Eb, Ia-4, Ia4

Location

Chromosome 17: 34,524,841-34,535,648 forward strand.

About this transcript

This transcript has 6 exons, is annotated with 17 domains and features, is associated with 1810 variant alleles and maps to 218 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000060586.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000074557.11	H2-Eb1-201	1171	287aa	ENSMUSP00000074143.10	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A498U6I0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSMUST00000235530.2	H2-Eb1-203	1669	264aa	ENSMUSP00000158533.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS37584	O78196	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSMUST00000236232.2	H2-Eb1-205	1082	92aa	ENSMUSP00000157594.2	Nonsense mediated decay		A0A494B9C8	-
ENSMUST00000235729.2	H2-Eb1-204	798	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
ENSMUST00000235501.2	H2-Eb1-202	782	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

Summary

Statistics

Exons: 6, Coding exons: 6, Transcript length: 1,669 bps, Translation length: 264 residues

CCDS

This transcript is a member of the Mouse CCDS set: CCDS37584

Version

ENSMUST00000235530.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000235530.2 H2-Eb1-203

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Transcript: ENSMUST00000235530.2 H2-Eb1-203

Summary

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