Transcript: ENSMUST00000235461.2 Pnliprp1-203

Description

pancreatic lipase related protein 1 [Source:MGI Symbol;Acc:MGI:97723]

Gene Synonyms

Plrp1

Location

Chromosome 19: 58,718,928-58,726,634 forward strand.

About this transcript

This transcript has 7 exons, is annotated with 1 domain and feature, is associated with 935 variant alleles and maps to 66 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000042179.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000048644.6	Pnliprp1-201	1619	473aa	ENSMUSP00000045465.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS29931	Q5BKQ4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000236445.2	Pnliprp1-206	889	252aa	ENSMUSP00000157947.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A494BA59	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000235461.2	Pnliprp1-203	671	35aa	ENSMUSP00000157428.2	Nonsense mediated decay		A0A494B903	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSMUST00000235509.2	Pnliprp1-204	613	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
ENSMUST00000235738.2	Pnliprp1-205	578	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
ENSMUST00000235457.2	Pnliprp1-202	469	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

Summary

Statistics

Exons: 7, Coding exons: 2, Transcript length: 671 bps, Translation length: 35 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENSMUST00000235461.2

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSMUST00000235461.2 Pnliprp1-203

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Transcript: ENSMUST00000235461.2 Pnliprp1-203

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