Transcript: ENSMUST00000234965.2 Colec12-204

Description

collectin sub-family member 12 [Source:MGI Symbol;Acc:MGI:2152907]

Gene Synonyms

CL-P1, SRCL, Scara4

Location

Chromosome 18: 9,707,595-9,882,644 forward strand.

About this transcript

This transcript has 10 exons, is annotated with 28 domains and features, is associated with 8962 variant alleles and maps to 286 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000036103.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000234965.2	Colec12-204	8024	742aa	ENSMUSP00000157132.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS37732	Q8K4Q8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSMUST00000040069.10	Colec12-201	3447	461aa	ENSMUSP00000043220.10	Nonsense mediated decay		A0A452J8C7	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000234149.2	Colec12-203	680	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
ENSMUST00000234026.2	Colec12-202	622	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

Summary

Statistics

Exons: 10, Coding exons: 10, Transcript length: 8,024 bps, Translation length: 742 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q8K4Q8

CCDS

This transcript is a member of the Mouse CCDS set: CCDS37732

Version

ENSMUST00000234965.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000234965.2 Colec12-204

Summary

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Transcript: ENSMUST00000234965.2 Colec12-204

Summary

About Us

Get help

Our sister sites

Follow us