Transcript: ENSMUST00000234623.2 Epcam-204

Description

epithelial cell adhesion molecule [Source:MGI Symbol;Acc:MGI:106653]

Gene Synonyms

CD326, EGP-2, Egp314, Ep-CAM, EpCAM, EpCAM1, GA733-2, Ly74, TROP1, Tacstd1, gp40, panepithelial glycoprotein 314

Location

Chromosome 17: 87,944,110-87,958,557 forward strand.

About this transcript

This transcript has 9 exons, is annotated with 13 domains and features, is associated with 1858 variant alleles and maps to 184 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000045394.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000053577.9	Epcam-201	2040	315aa	ENSMUSP00000061935.9	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS29018	Q99JW5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000234623.2	Epcam-204	1745	315aa	ENSMUSP00000157040.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS29018	Q99JW5	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSMUST00000234009.2	Epcam-202	904	111aa	ENSMUSP00000157099.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A3Q4EHR5	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000235125.2	Epcam-205	600	48aa	ENSMUSP00000157220.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A3Q4EI36	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000234354.2	Epcam-203	581	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-

Summary

Statistics

Exons: 9, Coding exons: 9, Transcript length: 1,745 bps, Translation length: 315 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q99JW5

CCDS

This transcript is a member of the Mouse CCDS set: CCDS29018

Version

ENSMUST00000234623.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000234623.2 Epcam-204

Summary

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Transcript: ENSMUST00000234623.2 Epcam-204

Summary

About Us

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