Transcript: ENSMUST00000232048.2 Scaf8-202

Description

SR-related CTD-associated factor 8 [Source:MGI Symbol;Acc:MGI:1925212]

Gene Synonyms

A630086M08Rik, A930036P18Rik, Rbm16

Location

Chromosome 17: 3,165,524-3,209,620 forward strand.

About this transcript

This transcript has 5 exons, is annotated with 7 domains and features, is associated with 2106 variant alleles and maps to 38 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000046201.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000076734.8	Scaf8-201	4866	1268aa	ENSMUSP00000076024.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS49927	Q6DID3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000232048.2	Scaf8-202	544	110aa	ENSMUSP00000156084.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A338P6R5	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000232079.2	Scaf8-203	1511	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-

Summary

Statistics

Exons: 5, Coding exons: 4, Transcript length: 544 bps, Translation length: 110 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENSMUST00000232048.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSMUST00000232048.2 Scaf8-202

Summary

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Transcript: ENSMUST00000232048.2 Scaf8-202

Summary

About Us

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