Transcript: ENSMUST00000231579.2 Hspbap1-202

Description

Hspb associated protein 1 [Source:MGI Symbol;Acc:MGI:1913917]

Gene Synonyms

3830421G21Rik

Location

Chromosome 16: 35,590,745-35,645,918 forward strand.

About this transcript

This transcript has 8 exons, is annotated with 12 domains and features, is associated with 4086 variant alleles and maps to 152 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000022849.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000231579.2	Hspbap1-202	1703	483aa	ENSMUSP00000156217.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS28142	Q8BK58	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSMUST00000023555.6	Hspbap1-201	4680	253aa	ENSMUSP00000023555.6	Nonsense mediated decay		A0A384DV63	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000231802.2	Hspbap1-203	5212	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

Summary

Statistics

Exons: 8, Coding exons: 8, Transcript length: 1,703 bps, Translation length: 483 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q8BK58

CCDS

This transcript is a member of the Mouse CCDS set: CCDS28142

Version

ENSMUST00000231579.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000231579.2 Hspbap1-202

Summary

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Transcript: ENSMUST00000231579.2 Hspbap1-202

Summary

About Us

Get help

Our sister sites

Follow us