Transcript: ENSMUST00000230271.2 Polr2f-205

Description

polymerase (RNA) II (DNA directed) polypeptide F [Source:MGI Symbol;Acc:MGI:1349393]

Gene Synonyms

1810060D16Rik, RNA Pol II

Location

Chromosome 15: 79,025,209-79,035,974 forward strand.

About this transcript

This transcript has 5 exons, is annotated with 12 domains and features, is associated with 1124 variant alleles and maps to 218 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000033020.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000230271.2	Polr2f-205	885	127aa	ENSMUSP00000155332.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS27634	P61219	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSMUST00000040077.8	Polr2f-201	452	112aa	ENSMUSP00000043566.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A2U3TZ54	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000229973.2	Polr2f-203	414	98aa	ENSMUSP00000155409.2	Nonsense mediated decay		A0A2R8VHS7	-
ENSMUST00000229978.2	Polr2f-204	1958	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
ENSMUST00000229762.2	Polr2f-202	509	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

Summary

Statistics

Exons: 5, Coding exons: 5, Transcript length: 885 bps, Translation length: 127 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P61219

CCDS

This transcript is a member of the Mouse CCDS set: CCDS27634

Version

ENSMUST00000230271.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000230271.2 Polr2f-205

Summary

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Transcript: ENSMUST00000230271.2 Polr2f-205

Summary

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