Transcript: ENSMUST00000229963.2 Gm5478-202

Description

predicted pseudogene 5478 [Source:MGI Symbol;Acc:MGI:3646318]

Location

Chromosome 15: 101,551,455-101,555,815 reverse strand.

About this transcript

This transcript has 9 exons, is annotated with 24 domains and features, is associated with 735 variant alleles and maps to 114 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000095241.3 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSMUST00000229963.2	Gm5478-202	2158	535aa	ENSMUSP00000155269.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2R8VHP3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSMUST00000100184.4	Gm5478-201	2566	159aa	ENSMUSP00000097759.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	D3Z6R0	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000230401.2	Gm5478-203	2960	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 9, Coding exons: 9, Transcript length: 2,158 bps, Translation length: 535 residues

Version

ENSMUST00000229963.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000229963.2 Gm5478-202

Summary

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Transcript: ENSMUST00000229963.2 Gm5478-202

Summary

About Us

Get help

Our sister sites

Follow us