Transcript: ENSMUST00000229866.2 Socs1-202

Description

suppressor of cytokine signaling 1 [Source:MGI Symbol;Acc:MGI:1354910]

Gene Synonyms

Cish1, Cish7, JAB, JAK-binding protein, JAK2-binding protein, SOCS-1, SSI-1, STAT-induced STAT inhibitor 1

Location

Chromosome 16: 10,600,104-10,603,400 reverse strand.

About this transcript

This transcript has 2 exons, is annotated with 15 domains and features, is associated with 604 variant alleles and maps to 219 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000038037.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000229866.2	Socs1-202	2908	212aa	ENSMUSP00000155530.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS27952	O35716	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSMUST00000038099.6	Socs1-201	2785	212aa	ENSMUSP00000038121.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS27952	O35716	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,

Summary

Statistics

Exons: 2, Coding exons: 1, Transcript length: 2,908 bps, Translation length: 212 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: O35716

CCDS

This transcript is a member of the Mouse CCDS set: CCDS27952

Version

ENSMUST00000229866.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000229866.2 Socs1-202

Summary

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Transcript: ENSMUST00000229866.2 Socs1-202

Summary

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