Transcript: ENSMUST00000229183.2 Rpl8-202

Description

ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]

Location

Chromosome 15: 76,788,302-76,790,514 forward strand.

About this transcript

This transcript has 5 exons, is annotated with 21 domains and features, is associated with 712 variant alleles and maps to 191 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000003970.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000229183.2	Rpl8-202	1020	257aa	ENSMUSP00000155657.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS27595	P62918	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSMUST00000004072.10	Rpl8-201	851	257aa	ENSMUSP00000004072.9	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS27595	P62918	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000229591.2	Rpl8-203	824	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

Summary

Statistics

Exons: 5, Coding exons: 5, Transcript length: 1,020 bps, Translation length: 257 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P62918

CCDS

This transcript is a member of the Mouse CCDS set: CCDS27595

Version

ENSMUST00000229183.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

inferred transcript model [Definitions]

RNA-Seq supported only

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000229183.2 Rpl8-202

Summary

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Transcript: ENSMUST00000229183.2 Rpl8-202

Summary

About Us

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