Transcript: ENSMUST00000228728.2 Vmn1r58-204

Description

vomeronasal 1 receptor 58 [Source:MGI Symbol;Acc:MGI:3033473]

Gene Synonyms

V1rd4, V3R4

Location

Chromosome 7: 5,404,680-5,416,395 reverse strand.

About this transcript

This transcript has 2 exons, is annotated with 12 domains and features, is associated with 1027 variant alleles and maps to 133 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000078808.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000108569.4	Vmn1r58-201	10140	310aa	ENSMUSP00000104209.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS39747	G3X9U3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000228728.2	Vmn1r58-204	9991	310aa	ENSMUSP00000154393.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS39747	G3X9U3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSMUST00000227549.2	Vmn1r58-203	9097	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-
ENSMUST00000226315.2	Vmn1r58-202	8948	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-

Summary

Statistics

Exons: 2, Coding exons: 1, Transcript length: 9,991 bps, Translation length: 310 residues

CCDS

This transcript is a member of the Mouse CCDS set: CCDS39747

Version

ENSMUST00000228728.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

inferred transcript model [Definitions]

RNA-Seq supported only

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000228728.2 Vmn1r58-204

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Transcript: ENSMUST00000228728.2 Vmn1r58-204

Summary

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