Transcript: ENSMUST00000227882.3 Gm5624-202

Description

predicted gene 5624 [Source:MGI Symbol;Acc:MGI:3646247]

Location

About this transcript

This transcript has 5 exons, is annotated with 4 domains and features, is associated with 3505 variant alleles and maps to 199 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSMUST00000227882.3	Gm5624-202	1500	162aa	ENSMUSP00000154449.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3BR58	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSMUST00000228629.2	Gm5624-203	1734	43aa	ENSMUSP00000153804.2	Nonsense mediated decay	A0A2I3BPI7	-
ENSMUST00000249477.1	Gm5624-204	1539	69aa	ENSMUSP00000159772.1	Nonsense mediated decay	-	-
ENSMUST00000226458.2	Gm5624-201	671	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined	-	-

Summary

Statistics

Exons: 5, Coding exons: 4, Transcript length: 1,500 bps, Translation length: 162 residues

Version

ENSMUST00000227882.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.