Transcript: ENSMUST00000227591.2 Smc1b-202

Description

structural maintenance of chromosomes 1B [Source:MGI Symbol;Acc:MGI:2154049]

Gene Synonyms

SMC1beta, Smc1l2

Location

About this transcript

This transcript has 4 exons, is associated with 976 variant alleles and maps to 32 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000023068.8	Smc1b-201	4047	1248aa	ENSMUSP00000023068.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS27718	A1L2Z0 Q920F6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000227591.2	Smc1b-202	336	15aa	ENSMUSP00000154461.2	Nonsense mediated decay		A0A2I3BR69	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 4, Coding exons: 2, Transcript length: 336 bps, Translation length: 15 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENSMUST00000227591.2

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.