Transcript: ENSMUST00000225275.2 Tpbpa-202

Description

trophoblast specific protein alpha [Source:MGI Symbol;Acc:MGI:98795]

Gene Synonyms

4311, Tb-1, Tb1, Tpbp, clone 4311

Location

Chromosome 13: 61,087,163-61,089,731 reverse strand.

About this transcript

This transcript has 5 exons, is annotated with 3 domains and features, is associated with 669 variant alleles and maps to 157 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000033834.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000225275.2	Tpbpa-202	642	125aa	ENSMUSP00000153002.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A286YCI4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENSMUST00000021885.8	Tpbpa-201	1621	124aa	ENSMUSP00000021885.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS36693	Q9CPR0	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000225936.2	Tpbpa-203	849	60aa	ENSMUSP00000152958.2	Nonsense mediated decay		A0A286YCU7	-

Summary

Statistics

Exons: 5, Coding exons: 4, Transcript length: 642 bps, Translation length: 125 residues

Version

ENSMUST00000225275.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000225275.2 Tpbpa-202

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Transcript: ENSMUST00000225275.2 Tpbpa-202

Summary

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