Transcript: ENSMUST00000225195.2 Kdm3b-206

Description

KDM3B lysine (K)-specific demethylase 3B [Source:MGI Symbol;Acc:MGI:1923356]

Gene Synonyms

5830462I21Rik, JHDM2B, Jmjd1b

Location

Chromosome 18: 34,910,100-34,971,713 forward strand.

About this transcript

This transcript has 23 exons, is associated with 3092 variant alleles and maps to 316 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000038773.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000043775.9	Kdm3b-201	6363	1762aa	ENSMUSP00000037628.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS37761	Q6ZPY7	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000224715.2	Kdm3b-204	2032	481aa	ENSMUSP00000153295.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q3UI14	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENSMUST00000225195.2	Kdm3b-206	5723	1333aa	ENSMUSP00000153446.2	Nonsense mediated decay		A0A286YDJ6	-
ENSMUST00000225260.2	Kdm3b-207	3498	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-
ENSMUST00000223567.2	Kdm3b-202	2997	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-
ENSMUST00000224065.2	Kdm3b-203	42	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-
ENSMUST00000225047.2	Kdm3b-205	2638	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

Summary

Statistics

Exons: 23, Coding exons: 19, Transcript length: 5,723 bps, Translation length: 1,333 residues

Version

ENSMUST00000225195.2

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSMUST00000225195.2 Kdm3b-206

Summary

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Transcript: ENSMUST00000225195.2 Kdm3b-206

Summary

About Us

Get help

Our sister sites

Follow us