Transcript: ENSMUST00000223951.2 Gnrh1-203

Description

gonadotropin releasing hormone 1 [Source:MGI Symbol;Acc:MGI:95789]

Gene Synonyms

LHRH, LNRH

Location

Chromosome 14: 67,983,719-67,986,802 forward strand.

About this transcript

This transcript has 3 exons, is annotated with 9 domains and features, is associated with 644 variant alleles and maps to 125 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000015812.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000111095.4	Gnrh1-201	486	90aa	ENSMUSP00000106724.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS27231	P13562 Q3UTE9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000223929.2	Gnrh1-202	428	45aa	ENSMUSP00000153349.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A286YDB0	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENSMUST00000223951.2	Gnrh1-203	411	90aa	ENSMUSP00000153071.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS27231	P13562 Q3UTE9	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,

Summary

Statistics

Exons: 3, Coding exons: 3, Transcript length: 411 bps, Translation length: 90 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P13562

CCDS

This transcript is a member of the Mouse CCDS set: CCDS27231

Version

ENSMUST00000223951.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000223951.2 Gnrh1-203

Summary

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Transcript: ENSMUST00000223951.2 Gnrh1-203

Summary

About Us

Get help

Our sister sites

Follow us