Transcript: ENSMUST00000223736.2 Ddx46-201

Description

DEAD box helicase 46 [Source:MGI Symbol;Acc:MGI:1920895]

Gene Synonyms

2200005K02Rik, 8430438J23Rik, DEAD (Asp-Glu-Ala-Asp) box polypeptide 46

Location

About this transcript

This transcript has 24 exons, is annotated with 34 domains and features, is associated with 2956 variant alleles and maps to 508 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000223736.2	Ddx46-201	5612	1032aa	ENSMUSP00000153328.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS70464	Q569Z5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSMUST00000231097.2	Ddx46-203	432	144aa	ENSMUSP00000155176.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A2R8VHK2	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENSMUST00000224551.2	Ddx46-202	4056	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

Summary

Statistics

Exons: 24, Coding exons: 23, Transcript length: 5,612 bps, Translation length: 1,032 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q569Z5

CCDS

This transcript is a member of the Mouse CCDS set: CCDS70464

Version

ENSMUST00000223736.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.