Transcript: ENSMUST00000223689.2 Ccdc66-202

Description

coiled-coil domain containing 66 [Source:MGI Symbol;Acc:MGI:2443639]

Gene Synonyms

E230015L20Rik

Location

Chromosome 14: 27,203,047-27,230,417 reverse strand.

About this transcript

This transcript has 18 exons, is annotated with 19 domains and features, is associated with 1590 variant alleles and maps to 281 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000046753.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000223689.2	Ccdc66-202	4262	935aa	ENSMUSP00000153023.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS36843	Q6NS45	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSMUST00000050480.8	Ccdc66-201	2457	779aa	ENSMUSP00000052546.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q6NS45-2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000224837.2	Ccdc66-203	514	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-

Summary

Statistics

Exons: 18, Coding exons: 18, Transcript length: 4,262 bps, Translation length: 935 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q6NS45

CCDS

This transcript is a member of the Mouse CCDS set: CCDS36843

Version

ENSMUST00000223689.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000223689.2 Ccdc66-202

Summary

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Transcript: ENSMUST00000223689.2 Ccdc66-202

Summary

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