Transcript: ENSMUST00000216645.2 Or1j11-202

Description

olfactory receptor family 1 subfamily E member 1 [Source:MGI Symbol;Acc:MGI:3030173]

Gene Synonyms

GA_x6K02T2NLDC-33116096-33117025, MOR136-3, Olfr339

Location

Chromosome 2: 36,308,959-36,316,135 forward strand.

About this transcript

This transcript has 2 exons, is annotated with 28 domains and features, is associated with 873 variant alleles and maps to 79 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000094464.3 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000216645.2	Or1j11-202	4867	309aa	ENSMUSP00000149068.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS15972	Q8VGK8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENSMUST00000071437.2	Or1j11-201	930	309aa	ENSMUSP00000071383.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS15972	Q8VGK8	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL NA: A transcript that was not analysed for TSL. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:NA,

Summary

Statistics

Exons: 2, Coding exons: 1, Transcript length: 4,867 bps, Translation length: 309 residues

CCDS

This transcript is a member of the Mouse CCDS set: CCDS15972

Transcript Support Level (TSL)

TSL:3

Version

ENSMUST00000216645.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

RNA-Seq supported partial [Definitions]

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000216645.2 Or1j11-202

Summary

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Transcript: ENSMUST00000216645.2 Or1j11-202

Summary

About Us

Get help

Our sister sites

Follow us