Transcript: ENSMUST00000216407.2 Or5af1-202

Description

olfactory receptor family 5 subfamily AF member 1 [Source:MGI Symbol;Acc:MGI:3030146]

Gene Synonyms

GA_x6K02T2NKPP-575829-574903, MOR222-4P, Olfr312

Location

Chromosome 11: 58,720,063-58,725,606 forward strand.

About this transcript

This transcript has 2 exons, is annotated with 25 domains and features, is associated with 1154 variant alleles and maps to 48 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000096806.3 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000216407.2	Or5af1-202	3776	308aa	ENSMUSP00000149697.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS24749	Q7TRZ9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000078217.2	Or5af1-201	927	308aa	ENSMUSP00000077344.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS24749	Q7TRZ9	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL NA: A transcript that was not analysed for TSL. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:NA,

Summary

Statistics

Exons: 2, Coding exons: 1, Transcript length: 3,776 bps, Translation length: 308 residues

CCDS

This transcript is a member of the Mouse CCDS set: CCDS24749

Transcript Support Level (TSL)

TSL:5

Version

ENSMUST00000216407.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

RNA-Seq supported partial [Definitions]

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000216407.2 Or5af1-202

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Transcript: ENSMUST00000216407.2 Or5af1-202

Summary

About Us

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