Transcript: ENSMUST00000209319.2 Lyve1-202

Description

lymphatic vessel endothelial hyaluronan receptor 1 [Source:MGI Symbol;Acc:MGI:2136348]

Gene Synonyms

1200012G08Rik, Lyve-1, Xlkd1, lymphatic vessel endothelial HA receptor-1

Location

Chromosome 7: 110,452,878-110,462,160 reverse strand.

About this transcript

This transcript has 4 exons, is associated with 893 variant alleles and maps to 85 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000030787.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000033050.5	Lyve1-201	2893	318aa	ENSMUSP00000033050.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS21748	Q8BHC0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000209319.2	Lyve1-202	802	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,

Summary

Statistics

Exons: 4, Coding exons: 0, Transcript length: 802 bps,

Transcript Support Level (TSL)

TSL:2

Version

ENSMUST00000209319.2

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSMUST00000209319.2 Lyve1-202

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Transcript: ENSMUST00000209319.2 Lyve1-202

Summary

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