Transcript: ENSMUST00000198265.5 Ambn-202

Description

ameloblastin [Source:MGI Symbol;Acc:MGI:104655]

Location

Chromosome 5: 88,603,850-88,616,041 forward strand.

About this transcript

This transcript has 11 exons, is annotated with 12 domains and features, is associated with 975 variant alleles and maps to 212 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000029288.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000198265.5	Ambn-202	1570	422aa	ENSMUSP00000142944.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS80322	Q5M8P3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000031226.9	Ambn-201	1854	407aa	ENSMUSP00000031226.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS51539	O55189	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,

Summary

Statistics

Exons: 11, Coding exons: 11, Transcript length: 1,570 bps, Translation length: 422 residues

CCDS

This transcript is a member of the Mouse CCDS set: CCDS80322

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000198265.5

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000198265.5 Ambn-202

Summary

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Transcript: ENSMUST00000198265.5 Ambn-202

Summary

About Us

Get help

Our sister sites

Follow us