Transcript: ENSMUST00000195363.2 Pcdhgb4-202

Description

protocadherin gamma subfamily B, 4 [Source:MGI Symbol;Acc:MGI:1935173]

Location

Chromosome 18: 37,853,422-37,974,923 forward strand.

About this transcript

This transcript has 4 exons, is annotated with 61 domains and features, is associated with 8126 variant alleles and maps to 224 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000103585.2 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000195363.2	Pcdhgb4-202	4665	912aa	ENSMUSP00000142227.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS79630	Q91XX6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000195069.2	Pcdhgb4-201	3682	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,

Summary

Statistics

Exons: 4, Coding exons: 4, Transcript length: 4,665 bps, Translation length: 912 residues

CCDS

This transcript is a member of the Mouse CCDS set: CCDS79630

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000195363.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000195363.2 Pcdhgb4-202

Summary

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Transcript: ENSMUST00000195363.2 Pcdhgb4-202

Summary

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