Transcript: ENSMUST00000194418.2 Pcdhga4-201

Description

protocadherin gamma subfamily A, 4 [Source:MGI Symbol;Acc:MGI:1935216]

Location

Chromosome 18: 37,818,263-37,974,926 forward strand.

About this transcript

This transcript has 4 exons, is annotated with 57 domains and features, is associated with 10190 variant alleles and maps to 239 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000103677.2 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000194418.2	Pcdhga4-201	4727	930aa	ENSMUSP00000142140.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS79625	Q91XY4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000195163.2	Pcdhga4-202	797	266aa	ENSMUSP00000141272.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A0A6YVU6	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3, 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,

Summary

Statistics

Exons: 4, Coding exons: 4, Transcript length: 4,727 bps, Translation length: 930 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q91XY4

CCDS

This transcript is a member of the Mouse CCDS set: CCDS79625

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000194418.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000194418.2 Pcdhga4-201

Summary

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Transcript: ENSMUST00000194418.2 Pcdhga4-201

Summary

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