Transcript: ENSMUST00000192535.2 Pcdhgb5-201

Description

protocadherin gamma subfamily B, 5 [Source:MGI Symbol;Acc:MGI:1935196]

Location

Chromosome 18: 37,864,062-37,974,926 forward strand.

About this transcript

This transcript has 4 exons, is annotated with 60 domains and features, is associated with 7436 variant alleles and maps to 236 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000103749.2 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000192535.2	Pcdhgb5-201	4670	926aa	ENSMUSP00000142010.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS79631	Q91XX5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000193006.2	Pcdhgb5-202	4569	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	TSL NA: A transcript that was not analysed for TSL. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:NA,

Summary

Statistics

Exons: 4, Coding exons: 4, Transcript length: 4,670 bps, Translation length: 926 residues

CCDS

This transcript is a member of the Mouse CCDS set: CCDS79631

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000192535.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000192535.2 Pcdhgb5-201

Summary

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Transcript: ENSMUST00000192535.2 Pcdhgb5-201

Summary

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