Transcript: ENSMUST00000184271.2 Calm5-202

Description

calmodulin 5 [Source:MGI Symbol;Acc:MGI:3511177]

Gene Synonyms

Scarf2

Location

Chromosome 13: 3,904,268-3,904,730 forward strand.

About this transcript

This transcript has 2 exons, is annotated with 18 domains and features, is associated with 473 variant alleles and maps to 87 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000099269.4 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000184271.2	Calm5-202	423	140aa	ENSMUSP00000139342.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS59581	Q6W3E0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000183198.4	Calm5-201	589	117aa	ENSMUSP00000139172.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A087WNL0	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL NA: A transcript that was not analysed for TSL. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:NA,

Summary

Statistics

Exons: 2, Coding exons: 2, Transcript length: 423 bps, Translation length: 140 residues

CCDS

This transcript is a member of the Mouse CCDS set: CCDS59581

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000184271.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000184271.2 Calm5-202

Summary

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Transcript: ENSMUST00000184271.2 Calm5-202

Summary

About Us

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