Transcript: ENSMUST00000182947.2 Mtnr1b-202

Description

melatonin receptor 1B [Source:MGI Symbol;Acc:MGI:2181726]

Gene Synonyms

Mel1b, Mt2

Location

Chromosome 9: 15,735,824-15,785,852 reverse strand.

About this transcript

This transcript has 3 exons, is annotated with 1 domain and feature, is associated with 3790 variant alleles and maps to 79 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000050901.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000057920.7	Mtnr1b-201	1095	364aa	ENSMUSP00000053086.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS22841	Q3SXF8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000182947.2	Mtnr1b-202	1835	364aa	ENSMUSP00000138524.2	Nonsense mediated decay	CCDS22841	Q3SXF8	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,

Summary

Statistics

Exons: 3, Coding exons: 2, Transcript length: 1,835 bps, Translation length: 364 residues

CCDS

This transcript is a member of the Mouse CCDS set: CCDS22841

Transcript Support Level (TSL)

TSL:2

Version

ENSMUST00000182947.2

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSMUST00000182947.2 Mtnr1b-202

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Transcript: ENSMUST00000182947.2 Mtnr1b-202

Summary

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