Transcript: ENSMUST00000179580.3 Trav13n-3-201

Description

T cell receptor alpha variable 13N-3 [Source:MGI Symbol;Acc:MGI:3645598]

Location

Chromosome 14: 53,574,579-53,575,096 forward strand.

About this transcript

This transcript has 2 exons, is annotated with 1 domain and feature, is associated with 517 variant alleles and maps to 254 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000096038.3 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000179580.3	Trav13n-3-201	337	112aa	ENSMUSP00000136279.2	Variable chain T cell receptor gene that undergoes somatic recombination before transcriptionTR V gene		J3QMG8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL NA: A transcript that was not analysed for TSL. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:NA, 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 2, Coding exons: 2, Transcript length: 337 bps, Translation length: 112 residues

Transcript Support Level (TSL)

TSL:NA

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENSMUST00000179580.3

Type

TR V gene

Annotation Method

Immunoglobulin (Ig) and T-cell receptor (TcR) annotation from Ensembl and Havana. Havana annotation was imported from the Havana project's manually curated IG gene set. Ensembl annotation was imported from the IMGT database using Exonerate. Click here for more details about the Ensembl annotation.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000179580.3 Trav13n-3-201

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Transcript: ENSMUST00000179580.3 Trav13n-3-201

Summary

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