Transcript: ENSMUST00000178179.2 1600014C23Rik-201

Description

RIKEN cDNA 1600014C23 gene [Source:MGI Symbol;Acc:MGI:1919490]

Location

About this transcript

This transcript has 2 exons, is annotated with 5 domains and features, is associated with 558 variant alleles and maps to 104 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000178179.2	1600014C23Rik-201	518	101aa	ENSMUSP00000136788.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS57097	Q9DAX4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000233108.2	1600014C23Rik-202	518	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-

Summary

Statistics

Exons: 2, Coding exons: 2, Transcript length: 518 bps, Translation length: 101 residues

CCDS

This transcript is a member of the Mouse CCDS set: CCDS57097

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000178179.2

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.