Transcript: ENSMUST00000176860.2 Bco1-202

Description

beta-carotene oxygenase 1 [Source:MGI Symbol;Acc:MGI:1926923]

Gene Synonyms

Bcdo, Bcdo1, Bcmo1, Cmoi, beta-CD, betaCMOOX

Location

Chromosome 8: 117,822,737-117,860,055 forward strand.

About this transcript

This transcript has 12 exons, is annotated with 5 domains and features, is associated with 2823 variant alleles and maps to 187 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000031845.17 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000034308.16	Bco1-201	2338	566aa	ENSMUSP00000034308.9	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS22697	Q05AC0 Q9JJS6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000176860.2	Bco1-202	1995	526aa	ENSMUSP00000134815.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS52679	E9Q321	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,

Summary

Statistics

Exons: 12, Coding exons: 11, Transcript length: 1,995 bps, Translation length: 526 residues

CCDS

This transcript is a member of the Mouse CCDS set: CCDS52679

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000176860.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000176860.2 Bco1-202

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Transcript: ENSMUST00000176860.2 Bco1-202

Summary

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