Transcript: ENSMUST00000174382.8 H2-T10-201

Description

histocompatibility 2, T region locus 10 [Source:MGI Symbol;Acc:MGI:95942]

Gene Synonyms

H-2T10

Location

Chromosome 17: 36,427,982-36,432,357 reverse strand.

About this transcript

This transcript has 10 exons, is associated with 984 variant alleles and maps to 363 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000079491.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	Flags
ENSMUST00000174382.8	H2-T10-201	1699	383aa	ENSMUSP00000133893.3	Protein coding LoF		A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000174625.8	H2-T10-202	3389	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,

Summary

Statistics

Exons: 10, Coding exons: 9, Transcript length: 1,699 bps, Translation length: 383 residues

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000174382.8

Type

Protein coding LoF

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000174382.8 H2-T10-201

Summary

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Transcript: ENSMUST00000174382.8 H2-T10-201

Summary

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