Transcript: ENSMUST00000171470.8 Lox-202

Description

lysyl oxidase [Source:MGI Symbol;Acc:MGI:96817]

Gene Synonyms

TSC-160, ras recision gene (rrg)

Location

Chromosome 18: 52,649,141-52,662,939 reverse strand.

About this transcript

This transcript has 8 exons, is annotated with 20 domains and features, is associated with 1222 variant alleles and maps to 251 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000024529.15 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000025409.9	Lox-201	4741	411aa	ENSMUSP00000025409.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS50289	P28301 Q3TXH3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000171470.8	Lox-202	4468	411aa	ENSMUSP00000129247.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS50289	P28301 Q3TXH3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,

Summary

Statistics

Exons: 8, Coding exons: 7, Transcript length: 4,468 bps, Translation length: 411 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P28301

CCDS

This transcript is a member of the Mouse CCDS set: CCDS50289

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000171470.8

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000171470.8 Lox-202

Summary

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Transcript: ENSMUST00000171470.8 Lox-202

Summary

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