Transcript: ENSMUST00000170945.2 Skint3-202

Description

selection and upkeep of intraepithelial T cells 3 [Source:MGI Symbol;Acc:MGI:3045331]

Gene Synonyms

A430090E18Rik

Location

Chromosome 4: 112,089,442-112,157,665 forward strand.

About this transcript

This transcript has 10 exons, is annotated with 20 domains and features, is associated with 3309 variant alleles and maps to 108 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000070868.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000170945.2	Skint3-202	3843	458aa	ENSMUSP00000131300.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS51268	A7TZF0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000038455.12	Skint3-201	3627	386aa	ENSMUSP00000042662.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS38838	A7TZF0-2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,

Summary

Statistics

Exons: 10, Coding exons: 9, Transcript length: 3,843 bps, Translation length: 458 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: A7TZF0

CCDS

This transcript is a member of the Mouse CCDS set: CCDS51268

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000170945.2

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000170945.2 Skint3-202

Summary

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Transcript: ENSMUST00000170945.2 Skint3-202

Summary

About Us

Get help

Our sister sites

Follow us