Transcript: ENSMUST00000166081.3 Vmn2r100-201

Description

vomeronasal 2, receptor 100 [Source:MGI Symbol;Acc:MGI:3648026]

Gene Synonyms

EG627537

Location

Chromosome 17: 19,724,994-19,755,493 forward strand.

About this transcript

This transcript has 6 exons, is annotated with 41 domains and features, is associated with 2287 variant alleles and maps to 111 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000091859.3 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000166081.3	Vmn2r100-201	5803	850aa	ENSMUSP00000128350.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS49977	E9QAZ9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000231465.2	Vmn2r100-202	5546	787aa	ENSMUSP00000156263.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A338P788	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

Summary

Statistics

Exons: 6, Coding exons: 6, Transcript length: 5,803 bps, Translation length: 850 residues

CCDS

This transcript is a member of the Mouse CCDS set: CCDS49977

Transcript Support Level (TSL)

TSL:5

Version

ENSMUST00000166081.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Annotation Attributes

inferred transcript model [Definitions]

RNA-Seq supported only

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000166081.3 Vmn2r100-201

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Transcript: ENSMUST00000166081.3 Vmn2r100-201

Summary

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