Transcript: ENSMUST00000165128.9 Armh1-203

Description

armadillo-like helical domain containing 1 [Source:MGI Symbol;Acc:MGI:2686507]

Gene Synonyms

Gm1661, LOC381543, LOC381544, Ncrna00082

Location

Chromosome 4: 117,070,531-117,109,114 reverse strand.

About this transcript

This transcript has 13 exons, is annotated with 6 domains and features, is associated with 2741 variant alleles and maps to 148 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000060268.13 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000165128.9	Armh1-203	1836	441aa	ENSMUSP00000128613.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS51280	E9Q963	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000130660.2	Armh1-202	618	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000077500.6	Armh1-201	1426	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,

Summary

Statistics

Exons: 13, Coding exons: 11, Transcript length: 1,836 bps, Translation length: 441 residues

CCDS

This transcript is a member of the Mouse CCDS set: CCDS51280

Transcript Support Level (TSL)

TSL:5

Version

ENSMUST00000165128.9

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Annotation Attributes

RNA-Seq supported partial [Definitions]

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000165128.9 Armh1-203

Summary

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Transcript: ENSMUST00000165128.9 Armh1-203

Summary

About Us

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