Transcript: ENSMUST00000164875.3 Vmn2r11-201

Description

vomeronasal 2, receptor 11 [Source:MGI Symbol;Acc:MGI:3643806]

Gene Synonyms

EG384219

Location

Chromosome 5: 109,191,226-109,207,435 reverse strand.

About this transcript

This transcript has 6 exons, is annotated with 40 domains and features, is associated with 1639 variant alleles and maps to 153 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000091450.4 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000164875.3	Vmn2r11-201	6216	861aa	ENSMUSP00000133218.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS51597	E9Q4X4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000240711.1	Vmn2r11-204	6177	848aa	ENSMUSP00000159504.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A8V5L0P5	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSMUST00000233971.2	Vmn2r11-203	7052	578aa	ENSMUSP00000156848.2	Nonsense mediated decay		A0A3B2W4B5	-
ENSMUST00000233894.2	Vmn2r11-202	2538	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

Summary

Statistics

Exons: 6, Coding exons: 6, Transcript length: 6,216 bps, Translation length: 861 residues

CCDS

This transcript is a member of the Mouse CCDS set: CCDS51597

Transcript Support Level (TSL)

TSL:5

Version

ENSMUST00000164875.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000164875.3 Vmn2r11-201

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Transcript: ENSMUST00000164875.3 Vmn2r11-201

Summary

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