Transcript: ENSMUST00000163595.3 Cdyl-202

Description

chromodomain protein, Y chromosome-like [Source:MGI Symbol;Acc:MGI:1339956]

Location

Chromosome 13: 35,925,296-36,058,041 forward strand.

About this transcript

This transcript has 7 exons, is annotated with 21 domains and features, is associated with 7259 variant alleles and maps to 273 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000059288.15 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000075220.14	Cdyl-201	3470	593aa	ENSMUSP00000074707.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS49235	Q9WTK2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000163595.3	Cdyl-202	3575	544aa	ENSMUSP00000131784.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS49236	Q9WTK2-2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000225602.2	Cdyl-203	643	79aa	ENSMUSP00000153274.2	Nonsense mediated decay		A0A286YDJ1	-
ENSMUST00000226071.2	Cdyl-204	368	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-

Summary

Statistics

Exons: 7, Coding exons: 7, Transcript length: 3,575 bps, Translation length: 544 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9WTK2

CCDS

This transcript is a member of the Mouse CCDS set: CCDS49236

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000163595.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000163595.3 Cdyl-202

Summary

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Transcript: ENSMUST00000163595.3 Cdyl-202

Summary

About Us

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