Transcript: ENSMUST00000162342.8 Ap1s3-203

Description

adaptor-related protein complex AP-1, sigma 3 [Source:MGI Symbol;Acc:MGI:1891304]

Gene Synonyms

Jr2, [s]3A

Location

Chromosome 1: 79,584,593-79,649,689 reverse strand.

About this transcript

This transcript has 5 exons, is annotated with 8 domains and features, is associated with 4348 variant alleles and maps to 216 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000054702.15 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000162342.8	Ap1s3-203	2876	154aa	ENSMUSP00000125268.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS35628	Q7TN05	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000159312.2	Ap1s3-201	902	71aa	ENSMUSP00000125119.2	Nonsense mediated decay		E0CXQ0	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000160706.2	Ap1s3-202	453	81aa	ENSMUSP00000125631.2	Nonsense mediated decay		E0CZ77	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,

Summary

Statistics

Exons: 5, Coding exons: 5, Transcript length: 2,876 bps, Translation length: 154 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q7TN05

CCDS

This transcript is a member of the Mouse CCDS set: CCDS35628

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000162342.8

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000162342.8 Ap1s3-203

Summary

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Transcript: ENSMUST00000162342.8 Ap1s3-203

Summary

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