Transcript: ENSMUST00000162151.3 Slc9c1-202

Description

solute carrier family 9, subfamily C (Na+-transporting carboxylic acid decarboxylase), member 1 [Source:MGI Symbol;Acc:MGI:2685456]

Gene Synonyms

LOC208169, Slc9a10, spermNHE

Location

Chromosome 16: 45,360,034-45,427,249 forward strand.

About this transcript

This transcript has 26 exons, is associated with 4087 variant alleles and maps to 197 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000033210.17 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000159945.8	Slc9c1-201	3836	1175aa	ENSMUSP00000124969.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS28198	Q6UJY2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000162774.7	Slc9c1-203	3583	163aa	ENSMUSP00000137925.2	Nonsense mediated decay		M0QWN6	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSMUST00000162151.3	Slc9c1-202	3474	520aa	ENSMUSP00000137721.2	Nonsense mediated decay		M0QW97	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 26, Coding exons: 13, Transcript length: 3,474 bps, Translation length: 520 residues

Transcript Support Level (TSL)

TSL:1

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENSMUST00000162151.3

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSMUST00000162151.3 Slc9c1-202

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Transcript: ENSMUST00000162151.3 Slc9c1-202

Summary

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