Transcript: ENSMUST00000153057.9 2210408F21Rik-213

Description

RIKEN cDNA 2210408F21 gene [Source:MGI Symbol;Acc:MGI:1920902]

Location

Chromosome 6: 31,197,254-31,314,339 forward strand.

About this transcript

This transcript has 6 exons, is associated with 5822 variant alleles and maps to 170 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000087380.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
ENSMUST00000201375.2	2210408F21Rik-215	1133	No protein	-	TEC	TSL NA: A transcript that was not analysed for TSL. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:NA,
ENSMUST00000151800.9	2210408F21Rik-211	1882	No protein	-	lncRNA	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000241670.1	2210408F21Rik-224	1881	No protein	-	lncRNA	-
ENSMUST00000241275.1	2210408F21Rik-219	1804	No protein	-	lncRNA	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENSMUST00000241952.1	2210408F21Rik-229	1794	No protein	-	lncRNA	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENSMUST00000241836.1	2210408F21Rik-228	1734	No protein	-	lncRNA	-
ENSMUST00000246354.1	2210408F21Rik-279	1697	No protein	-	lncRNA	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENSMUST00000245272.1	2210408F21Rik-263	1679	No protein	-	lncRNA	-
ENSMUST00000243327.1	2210408F21Rik-243	1678	No protein	-	lncRNA	-
ENSMUST00000136571.9	2210408F21Rik-204	1654	No protein	-	lncRNA	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENSMUST00000241398.1	2210408F21Rik-220	1621	No protein	-	lncRNA	-
ENSMUST00000246182.1	2210408F21Rik-275	1607	No protein	-	lncRNA	-
ENSMUST00000242723.1	2210408F21Rik-236	1557	No protein	-	lncRNA	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENSMUST00000246426.1	2210408F21Rik-282	1114	No protein	-	lncRNA	-
ENSMUST00000247052.1	2210408F21Rik-286	1073	No protein	-	lncRNA	-
ENSMUST00000123149.9	2210408F21Rik-201	1042	No protein	-	lncRNA	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000242674.1	2210408F21Rik-235	1042	No protein	-	lncRNA	-
ENSMUST00000155345.9	2210408F21Rik-214	1023	No protein	-	lncRNA	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000245172.1	2210408F21Rik-262	1022	No protein	-	lncRNA	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENSMUST00000246127.1	2210408F21Rik-274	1005	No protein	-	lncRNA	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENSMUST00000244125.1	2210408F21Rik-253	977	No protein	-	lncRNA	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENSMUST00000242073.1	2210408F21Rik-231	961	No protein	-	lncRNA	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENSMUST00000246589.1	2210408F21Rik-285	960	No protein	-	lncRNA	-
ENSMUST00000241755.1	2210408F21Rik-226	889	No protein	-	lncRNA	-
ENSMUST00000243621.1	2210408F21Rik-248	885	No protein	-	lncRNA	-
ENSMUST00000242234.1	2210408F21Rik-232	876	No protein	-	lncRNA	-
ENSMUST00000244961.1	2210408F21Rik-259	868	No protein	-	lncRNA	-
ENSMUST00000245952.1	2210408F21Rik-271	868	No protein	-	lncRNA	-
ENSMUST00000246533.1	2210408F21Rik-283	866	No protein	-	lncRNA	-
ENSMUST00000138606.9	2210408F21Rik-205	851	No protein	-	lncRNA	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000241772.1	2210408F21Rik-227	850	No protein	-	lncRNA	-
ENSMUST00000245346.1	2210408F21Rik-265	841	No protein	-	lncRNA	-
ENSMUST00000244005.1	2210408F21Rik-252	834	No protein	-	lncRNA	-
ENSMUST00000245757.1	2210408F21Rik-269	815	No protein	-	lncRNA	-
ENSMUST00000243721.1	2210408F21Rik-250	799	No protein	-	lncRNA	-
ENSMUST00000243441.1	2210408F21Rik-244	787	No protein	-	lncRNA	-
ENSMUST00000241415.1	2210408F21Rik-221	779	No protein	-	lncRNA	-
ENSMUST00000153057.9	2210408F21Rik-213	775	No protein	-	lncRNA	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENSMUST00000243651.1	2210408F21Rik-249	756	No protein	-	lncRNA	-
ENSMUST00000245306.1	2210408F21Rik-264	752	No protein	-	lncRNA	-
ENSMUST00000246578.1	2210408F21Rik-284	752	No protein	-	lncRNA	-
ENSMUST00000242937.1	2210408F21Rik-240	744	No protein	-	lncRNA	-
ENSMUST00000242823.1	2210408F21Rik-238	719	No protein	-	lncRNA	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENSMUST00000246274.1	2210408F21Rik-277	718	No protein	-	lncRNA	-
ENSMUST00000241732.1	2210408F21Rik-225	717	No protein	-	lncRNA	-
ENSMUST00000243478.1	2210408F21Rik-245	716	No protein	-	lncRNA	-
ENSMUST00000241601.1	2210408F21Rik-223	712	No protein	-	lncRNA	-
ENSMUST00000246195.1	2210408F21Rik-276	711	No protein	-	lncRNA	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENSMUST00000243604.1	2210408F21Rik-247	708	No protein	-	lncRNA	-
ENSMUST00000243131.1	2210408F21Rik-241	707	No protein	-	lncRNA	-
ENSMUST00000245970.1	2210408F21Rik-272	703	No protein	-	lncRNA	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENSMUST00000245112.1	2210408F21Rik-260	695	No protein	-	lncRNA	-
ENSMUST00000151076.9	2210408F21Rik-210	694	No protein	-	lncRNA	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000240809.1	2210408F21Rik-216	689	No protein	-	lncRNA	-
ENSMUST00000242882.1	2210408F21Rik-239	687	No protein	-	lncRNA	-
ENSMUST00000244771.1	2210408F21Rik-257	687	No protein	-	lncRNA	-
ENSMUST00000245875.1	2210408F21Rik-270	684	No protein	-	lncRNA	-
ENSMUST00000246330.1	2210408F21Rik-278	676	No protein	-	lncRNA	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENSMUST00000245633.1	2210408F21Rik-268	672	No protein	-	lncRNA	-
ENSMUST00000244884.1	2210408F21Rik-258	667	No protein	-	lncRNA	-
ENSMUST00000245589.1	2210408F21Rik-267	658	No protein	-	lncRNA	-
ENSMUST00000242503.1	2210408F21Rik-234	655	No protein	-	lncRNA	-
ENSMUST00000245990.1	2210408F21Rik-273	647	No protein	-	lncRNA	-
ENSMUST00000246402.1	2210408F21Rik-281	636	No protein	-	lncRNA	-
ENSMUST00000243282.1	2210408F21Rik-242	626	No protein	-	lncRNA	-
ENSMUST00000244488.1	2210408F21Rik-255	625	No protein	-	lncRNA	-
ENSMUST00000242370.1	2210408F21Rik-233	612	No protein	-	lncRNA	-
ENSMUST00000243783.1	2210408F21Rik-251	612	No protein	-	lncRNA	-
ENSMUST00000244269.1	2210408F21Rik-254	611	No protein	-	lncRNA	-
ENSMUST00000241528.1	2210408F21Rik-222	601	No protein	-	lncRNA	-
ENSMUST00000138653.9	2210408F21Rik-206	597	No protein	-	lncRNA	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000152157.9	2210408F21Rik-212	580	No protein	-	lncRNA	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENSMUST00000146778.8	2210408F21Rik-209	579	No protein	-	lncRNA	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000245539.1	2210408F21Rik-266	576	No protein	-	lncRNA	-
ENSMUST00000245130.1	2210408F21Rik-261	557	No protein	-	lncRNA	-
ENSMUST00000139444.9	2210408F21Rik-207	544	No protein	-	lncRNA	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENSMUST00000242766.1	2210408F21Rik-237	542	No protein	-	lncRNA	-
ENSMUST00000241051.1	2210408F21Rik-217	536	No protein	-	lncRNA	-
ENSMUST00000246372.1	2210408F21Rik-280	527	No protein	-	lncRNA	-
ENSMUST00000242046.1	2210408F21Rik-230	517	No protein	-	lncRNA	-
ENSMUST00000241172.1	2210408F21Rik-218	504	No protein	-	lncRNA	-
ENSMUST00000144612.8	2210408F21Rik-208	450	No protein	-	lncRNA	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENSMUST00000243545.1	2210408F21Rik-246	432	No protein	-	lncRNA	-
ENSMUST00000244678.1	2210408F21Rik-256	431	No protein	-	lncRNA	-
ENSMUST00000133510.2	2210408F21Rik-203	429	No protein	-	lncRNA	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENSMUST00000124811.2	2210408F21Rik-202	384	No protein	-	lncRNA	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,

Summary

Statistics

Exons: 6, Coding exons: 0, Transcript length: 775 bps,

Transcript Support Level (TSL)

TSL:3

Version

ENSMUST00000153057.9

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

Transcript: ENSMUST00000153057.9 2210408F21Rik-213

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Transcript: ENSMUST00000153057.9 2210408F21Rik-213

Summary

About Us

Get help

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